Introduced non-native fishes have the potential to substantially alter aquatic ecology in the introduced range through competition and predation. The Alaska blackfish () is a freshwater fish endemic to Chukotka and Alaska north of the Alaska Range (Beringia); the species was introduced outside of its native range to the Cook Inlet Basin of Alaska in the 1950s, where it has since become widespread. Here we characterize the diet of Alaska blackfish at three Cook Inlet Basin sites, including a lake, a stream, and a wetland. We analyze stomach plus esophageal contents to assess potential impacts on native species via competition or predation. Alaska blackfish in the Cook Inlet Basin consume a wide range of prey, with major prey consisting of epiphytic/benthic dipteran larvae, gastropods, and ostracods. Diets of the introduced populations of Alaska blackfish are similar in composition to those of native juvenile salmonids and stickleback. Thus, Alaska blackfish may affect native fish populations via competition. Fish ranked third in prey importance for both lake and stream blackfish diets but were of minor importance for wetland blackfish.

Closely related species of fishes often have different sex chromosome systems. Such rapid turnover of sex chromosomes can occur by several mechanisms, including fusions between an existing sex chromosome and an autosome. These fusions can result in a multiple sex chromosome system, where a species has both an ancestral and a neo-sex chromosome. Although this type of multiple sex chromosome system has been found in many fishes, little is known about the mechanisms that select for the formation of neo-sex chromosomes, or the role of neo-sex chromosomes in phenotypic evolution and speciation. The identification of closely related, sympatric species pairs in which one species has a multiple sex chromosome system and the other has a simple sex chromosome system provides an opportunity to study sex chromosome turnover. Recently, we found that a population of threespine stickleback () from Japan has an XXY multiple sex chromosome system resulting from a fusion between the ancestral Y chromosome and an autosome, while a sympatric threespine stickleback population has a simple XY sex chromosome system. Furthermore, we demonstrated that the neo-X chromosome () plays an important role in phenotypic divergence and reproductive isolation between these sympatric stickleback species pairs. Here, we review multiple sex chromosome systems in fishes, as well as recent advances in our understanding of the evolutionary role of sex chromosome turnover in stickleback speciation.

Billfishes are considered important fishery resources and the identification of aggregation sites is imperative for proper management. Here we present evidence of a seasonal aggregation site for juvenile istiophorid billfishes in southern Brazil. We discuss the results as they relate with the need for management at a local scale and participatory monitoring with artisanal fishing communities as a way to ensure access to data on the occurrence and population status in the long term.

Smallmouth bass () predation on subyearling fall Chinook salmon () was examined in the Snake River (USA) to identify seasonal and habitat-related changes in bass diets, and associated subyearling consumption and loss in various riverine and impounded reaches. Smallmouth bass diets reflected opportunistic foraging that at times showed predation on subyearlings is influenced by the consumption of other prey such as crayfish, sand roller (), and smaller invertebrates. Estimated loss of subyearlings was influenced by bass abundance and consumption rates. The highest bass abundances (> 1,000 bass/river kilometer) were observed in the upper reach of Hells Canyon early in April and May, and in Lower Granite Reservoir. Peak consumption rates of subyearlings (≥ 0.12 subyearlings/bass/day) occurred in the upper reach of Hells Canyon during May and in most reservoir reaches in June. Predation losses accumulated evenly along the river continuum from riverine to reservoir habitats. We estimated that 869,371 subyearlings could be lost to smallmouth bass predation between riverine production areas and Lower Granite Dam in a given year. To provide a context for this estimated loss, we provide an illustration of its potential effect on the adult population. Assuming no juvenile mortality occurred downstream of the dam and depending on smolt-to-adult return rates, this represented up to 3.9-16.0% of the potential adult run that could have returned to Lower Granite Dam had no subyearling predation by smallmouth bass occurred upstream of the dam. Although this study was limited by a number of assumptions and constraints, it does provide an illustration of how predation affects juvenile and adult salmon loss over a broad, changing river landscape.

Atlantic Bonefish () are economically important due to their popularity with recreational anglers. In the State of Florida, USA, bonefish population numbers declined by approximately 60% between the 1990s and 2015. Habitat loss, water quality impairment, chemical inputs, and other anthropogenic factors have been implicated as causes, but the role of pathogens has been largely overlooked, especially with respect to viruses. We used a metagenomic approach to identify and quantify viruses in the blood of 103 sampled throughout their Western Atlantic range, including populations in Florida that have experienced population declines and populations in Belize, Mexico, Puerto Rico, and The Bahamas that have remained apparently stable. We identified four viruses, all of which are members of families known to infect marine fishes (, , , and ), but all of which were previously undescribed. Bonefish from Florida and Mexico had higher viral richness (numbers of distinct viruses per individual fish) than fish sampled from other areas, and bonefish from the Upper Florida Keys had the highest prevalence of viral infection (proportion of positive fish) than fish sampled from any other location. Bonefish from Florida also had markedly higher viral loads than fish sampled from any other area, both for a novel narnavirus and for all viruses combined. Bonefish viruses may be indicators of environmentally driven physiological and immunological compromise, causes of ill health, or both.

There has been a recent flurry of publications describing the potential effects of the COVID-19 pandemic on both commercial and recreational fisheries. As of yet, studies have only provided insights from researchers or industry experts detailing perceived consequences, or from survey data indicating modifications in angler activity levels and behaviours. Using real recreational fisheries data from an ongoing radio telemetry study (2018-present), we explored changes in the relative exploitation rates of rainbow trout (; Walbaum 1792) in the Saugeen River, Ontario, a tributary to Lake Huron, before compared to during the pandemic. Restrictions on site access that affected the implementation of important management activities that usually support this popular fishery are also discussed. During the initial phase of complete public lock-downs imposed during spring 2020, angler exploitation rates decreased to half that reported prior to the pandemic. Fishway operations were temporarily suspended and hatchery efforts were interrupted. Once restrictions began to ease in fall 2020, there was an eight-fold increase in overall exploitation rate and a four and a half-fold increase in harvest rate compared to seasons prior to the pandemic. While the full impact of the ongoing pandemic on the Lake Huron fishery is not likely to be fully realized for several years, the potential effects on future return run sizes may need to be considered by fisheries managers monitoring trends in population escapement.

Animals that congregate in large numbers to reproduce in spatially and temporally distinct locations are particularly susceptible to overexploitation. Many fishes form spawning aggregations that are intentionally targeted given ease of capture. Bonefish ( spp.) species aggregate to spawn and are culturally and economically important, but generally lack management such as spawning area protections to ensure that fisheries are sustainable. Here, we use Cuba as a case study to inform the development and refinement of management strategies for bonefish. Recommendations for the management of bonefish pre-spawning aggregations were based on international experiences, which have been adapted to the Cuban context from results of surveys and interviews with Cuban fisheries professionals and fishing guides. The achievability and feasibility of recommendations were further reviewed by additional experts in the field of fisheries, management and Cuban policy. The process revealed extensive data-limitations for bonefish fisheries and underscored the importance of including fishing guides, local ecological knowledge and the context of marine protected areas in Cuba for bonefish management. Recommendations include (1) initiating information exchange between Cuban management agencies and third-party institutions related to bonefish management; (2) utilizing local ecological knowledge to gather information, formulate management strategies and enforce regulations; (3) implementing spatial and temporal management measures for bonefish spawning sites; (4) using what is already in place, by protecting spawning sites in the context of existing marine protected areas; (5) collaborating with all stakeholders to manage bonefish spawning sites; and (6) reducing the commercial harvest of the species.

Tropical and subtropical coastal flats are shallow regions of the marine environment at the intersection of land and sea. These regions provide myriad ecological goods and services, including recreational fisheries focused on flats-inhabiting fishes such as bonefish, tarpon, and permit. The cascading effects of climate change have the potential to negatively impact coastal flats around the globe and to reduce their ecological and economic value. In this paper, we consider how the combined effects of climate change, including extremes in temperature and precipitation regimes, sea level rise, and changes in nutrient dynamics, are causing rapid and potentially permanent changes to the structure and function of tropical and subtropical flats ecosystems. We then apply the available science on recreationally targeted fishes to reveal how these changes can cascade through layers of biological organization-from individuals, to populations, to communities-and ultimately impact the coastal systems that depend on them. We identify critical gaps in knowledge related to the extent and severity of these effects, and how such gaps influence the effectiveness of conservation, management, policy, and grassroots stewardship efforts.

Evaluation of the impact of climatic changes on the composition of fish assemblages requires quantitative measures that can be compared across space and time. In this respect, the mean temperature of the catch (MTC) approach has been proven to be a very useful tool for monitoring the effect of climate change on fisheries catch. Lack of baseline data and deep-time analogues, however, prevent a more comprehensive evaluation. In this study, we explore the applicability of the mean temperature approach to fossil fish faunas by using otolith assemblage data from the eastern Mediterranean and the northern Adriatic coastal environments corresponding to the last 8000 years (Holocene) and the interval 2.58-1.80 Ma B. P. (Early Pleistocene). The calculated mean temperatures of the otolith assemblage (MTO) range from 13.5 to 17.3 °C. This case study shows that the MTO can successfully capture compositional shifts in marine fish faunas based on variations in their climatic affinity driven by regional climate differences. However, the index is sensitive to methodological choices and thus requires standardized sampling. Even though theoretical and methodological issues prevent direct comparisons between MTO and MTC values, the MTO offers a useful quantitative proxy for reconstructing spatial and temporal trends in the biogeographic affinity of fossil otolith assemblages.

Climate change is altering the distribution and composition of marine fish populations globally, which presents substantial risks to the social and economic well-being of humanity. While deriving long-term climatic baselines is an essential step for detecting and attributing the magnitude of climate change and its impacts, these baselines tend to be limited to historical datasets and palaeoecological sediment records. Here, we develop a method for estimating the 'ancient Mean Temperature of the Catch' (aMTC) using Indigenous fisheries catch records from two archaeological sites in the northeast Pacific. Despite different catch compositions, we observe an increase in aMTC over a 5,000-year period at two contemporaneously occupied archaeological sites in southwestern British Columbia, Canada. We document cooler catches from 5,000 to 3,000 cal yr BP and comparatively warmer catches from 1,800 to 250 cal yr BP. These warmer temperatures are broadly consistent with palaeoceanographic sea surface temperature proxies from British Columbia and Alaska. Because this method requires converting measures of fish bones into estimates of fish size structure, abundance, biomass, and finally aMTC, opportunities exist to account for both variation and uncertainty at every step. Nevertheless, given that preindustrial fisheries data are ubiquitous in coastal archaeological sites, this method has the potential to be applied globally to broaden the temporal and geographic scale of ocean temperature baselines.

Climate-driven declines in oxythermal habitat in freshwater lakes can impose prolonged constraints on cold-water fishes sensitive to hypoxia. How fish cope with severe habitat limitations is not well understood, yet has implications for their persistence. Here, we use acoustic-positioning telemetry to assess seasonal habitat occupancy and activity patterns of lake whitefish (), a cold-water benthivore, in a small boreal lake that regularly faces severe oxythermal constraints during summer stratification. During this stratified period, they rarely (< 15% of detections) occupied depths with water temperatures > 10 °C (interquartile range = 5.3-7.9 °C), which resulted in extensive use (> 90% of detections) of water with < 4 mg L dissolved oxygen (DO; interquartile range = 0.3-5.3 mg L). Lake whitefish were least active in winter and spring, but much more active in summer, when only a small portion of the lake (1-10%) contained optimal oxythermal habitat (< 10 °C and > 4 mg L DO), showing frequent vertical forays into low DO environments concurrent with extensive lateral movement (7649 m d). High rates of lateral movement (8392 m d) persisted in the complete absence of optimal oxythermal habitat, but without high rates of vertical forays. We found evidence that lake whitefish are more tolerant of hypoxia (< 2 mg L) than previously understood, with some individuals routinely occupying hypoxic habitat in winter (up to 93% of detections) despite the availability of higher DO habitat. The changes in movement patterns across the gradient of habitat availability indicate that the behavioural responses of lake whitefish to unfavourable conditions may lead to changes in foraging efficiency and exposure to physiological stress, with detrimental effects on their persistence.

Coastal marine fisheries and the habitats that support them are under extensive and increasing pressures from numerous anthropogenic stressors that occur at multiple spatial and temporal scales and often intersect in unexpected ways. Frequently, the scales at which these fisheries are managed do not match the scales of the stressors, much less the geographic scale of species biology. In general, fishery management is ill prepared to address these stressors, as underscored by the continuing lack of integration of fisheries and habitat management. However, research of these fisheries is increasingly being conducted at spatial and temporal scales that incorporate biology and ecological connectivity of target species, with growing attention to the foundational role of habitat. These efforts are also increasingly engaging stakeholders and rights holders in research, education, and conservation. This multi-method approach is essential for addressing pressing conservation challenges that are common to flats ecosystems. Flats fisheries occur in the shallow, coastal habitat mosaic that supports fish species that are accessible to and desirable to target by recreational fishers. Because these species rely upon coastal habitats, the anthropogenic stressors can be especially intense-habitat alteration (loss and degradation) and water quality declines are being exacerbated by climate change and increasing direct human impacts (e.g., fishing effort, boat traffic, depredation, pollution). The connections necessary for effective flats conservation are of many modes and include ontogenetic habitat connectivity; connections between stressors and impacts to fishes; connections between research and management, such as research informing spawning area protections; and engagement of stakeholders and rights holders in research, education, and management. The articles included in this Special Issue build upon a growing literature that is filling knowledge gaps for flats fishes and their habitats and increasingly providing the evidence to inform resource management. Indeed, numerous articles in this issue propose or summarize direct application of research findings to management with a focus on current and future conservation challenges. As with many other fisheries, a revised approach to management and conservation is needed in the Anthropocene.

The Arctic is warming at an unprecedented rate and with longer growing seasons, greater rainfall, and less snowfall. Cold-adapted ectotherms, such as the Arctic charr, (Linnaeus 1758), are likely to experience changes to growth as a result. Anadromous Arctic charr (charr, hereafter) are of great importance for northern communities, providing a source of income from commercial fisheries and food security from subsistence harvest. Initially, warming is expected to increase the growth of charr, benefitting subsistence and commercial fisheries in the short term. However, over longer time scales, temperatures exceeding the optimum for growth will likely result in metabolic stress, slowed growth, and higher mortality. Thus, the long-term consequences of climate change will likely be negative. We assessed anadromous charr growth from 1984 to 2013 in three stocks around Cumberland Sound using otolith measurements as proxies for age-specific growth. Trend analyses indicated growth had increased in pre-migratory ages over the years. We used mixed models to investigate changes to growth for ages 1-10 in relation to climate variables, finding that growing degree days had the greatest positive influence on ages 1-6 while annual precipitation had an overall negative effect on growth in ages 1-2 and 6-10. Contrary to previous assessments on these stocks, our results suggest charr have indeed experienced changes to growth with climate change. These findings emphasize the need for more thorough long-term growth studies in the management of fisheries as altered growth will affect food security and the economy across the Canadian Arctic.