Remote Sensing

A Machine Learning Model Integrating Remote Sensing, Ground Station, and Geospatial Data to Predict Fine-Resolution Daily Air Temperature for Tuscany, Italy
Limoncella G, Feurer D, Roye D, de Hoogh K, de la Cruz A, Gasparrini A, Schneider R, Pirotti F, Catelan D, Stafoggia M, de'Donato F, Biscardi G, Marzi C, Baccini M and Sera F
Heat-related morbidity and mortality are increasing due to climate change, emphasizing the need to identify vulnerable areas and people exposed to extreme temperatures. To improve heat stress impact assessment, we developed a replicable machine learning model that integrates remote sensing, ground station, and geospatial data to estimate daily air temperature at a spatial resolution of 100 m 100 m across the region of Tuscany, Italy. Using a two-stage approach, we first imputed missing land surface temperature data from MODIS using gradient-boosted trees and spatio-temporal predictors. Then, we modeled daily maximum and minimum air temperatures by incorporating monitoring station observations, satellite-derived data (MODIS, Landsat 8), topography, land cover, meteorological variables (ERA5-land), and vegetation indices (NDVI). The model achieved high predictive accuracy, with R values of 0.95 for Tmax and 0.92 for Tmin, and root mean square errors (RMSE) of 1.95 °C and 1.96 °C, respectively. It effectively captured both temporal (R: 0.95; 0.94) and spatial (R: 0.92; 0.72) temperature variations, allowing for the creation of high-resolution maps. These results highlight the potential of integrating Earth Observation and machine learning to generate high-resolution temperature maps, offering valuable insights for urban planning, climate adaptation, and epidemiological studies on heat-related health effects.
Expanding the Application of Sentinel-2 Chlorophyll Monitoring across United States Lakes
Salls WB, Schaeffer BA, Pahlevan N, Coffer MM, Seegers BN, Werdell PJ, Ferriby H, Stumpf RP, Binding CE and Keith DJ
Eutrophication of inland lakes poses various societal and ecological threats, making water quality monitoring crucial. Satellites provide a comprehensive and cost-effective supplement to traditional in situ sampling. The Sentinel-2 MultiSpectral Instrument (S2 MSI) offers unique spectral bands positioned to quantify chlorophyll , a water-quality and trophic-state indicator, along with fine spatial resolution, enabling the monitoring of small waterbodies. In this study, two algorithms-the Maximum Chlorophyll Index (MCI) and the Normalized Difference Chlorophyll Index (NDCI)-were applied to S2 MSI data. They were calibrated and validated using in situ chlorophyll measurements for 103 lakes across the contiguous U.S. Both algorithms were tested using top-of-atmosphere reflectances ( ), Rayleigh-corrected reflectances ( ), and remote sensing reflectances ( ). MCI slightly outperformed NDCI across all reflectance products. MCI using showed the best overall performance, with a mean absolute error factor of 2.08 and a mean bias factor of 1.15. Conversion of derived chlorophyll to trophic state improved the potential for management applications, with 82% accuracy using a binary classification. We report algorithm-to-chlorophyll- conversions that show potential for application across the U.S., demonstrating that S2 can serve as a monitoring tool for inland lakes across broad spatial scales.
Greening the Urban Landscape: Assessing the Impact of Tree-Planting Initiatives and Climate Influences on Miami-Dade County's Greenness
Dewald JR, Southworth J, Szapocznik J, Lombard JL and Brown SC
In urban settings, trees and greenery play a vital role in environmental well-being and community vitality. This study explores the impact of Miami-Dade County's tree-planting initiative on urban greenness and considers the influence of climate dynamics. Using Landsat data from 2006 to 2019, we find stable overall greenness, with 5.64% of the Census blocks exhibiting significant changes. Seasonal analysis reveals winter as prominent, with 61.47% of Census blocks showing increased greenness. Temperature and precipitation, especially post-2010, correlate with greenness changes. Despite a reported increase in tree cover from 14% to 20%, our findings show only 5-6% of Census blocks with statistically significant changes, highlighting the complexity of achieving substantial improvements in green canopy coverage. The study raises questions about the efficacy of large-scale tree-planting initiatives in densely urbanized areas when human factors are not well understood. Implications for urban planning stress the importance of preserving green spaces and informed decision-making for enhancing vegetation cover in Miami-Dade County, emphasizing the need to consider local conditions, seasonal variations, policies, and human factors in urban greening efforts.
Remote Sensing-Based Outdoor Thermal Comfort Assessment in Local Climate Zones in the Rural-Urban Continuum of eThekwini Municipality, South Africa
Mushore TD, Odindi J, Slotow R and Mutanga O
Due to the need to continuously monitor and understand the thermal environment and its socioeconomic implications, this study used remotely sensed data to analyze thermal comfort variation in LCZs, including along the rural to urban gradient of the eThekwini Municipality in KwaZulu-Natal province of South Africa. LCZs were mapped using multi-temporal and multi-spectral Landsat 8 and Landsat 9 data using the approach by World Urban Database and Access Portal Tools (WUDAPT), while thermal data were used to retrieve land surface temperatures (LSTs). Data for training classification of LCZs and accuracy assessment were digitized from GoogleEarth guided by knowledge gained and data collected during a field survey in March 2022 as well as pre-existing maps. LCZs were mapped using the random forest classifier in SAGA GIS software while a single channel algorithm based on band 10 was used to compute LST for different scenes. The LSTs were adjusted and further used to derive thermal comfort based on the Universal Thermal Comfort Index (UTCI) categories as an indicator for outdoor thermal comfort on the extremely low- and extremely high-temperature periods in the cool and hot seasons, respectively. LCZs were mapped with high accuracy (overall accuracy of 90.1% and kappa of 0.88) while inter-class separability was high (>1.5) for all LCZ pairs. Built-up LCZs dominate the eastern parts of the municipality, signifying the influence of the sea on development within the area. Average LST was coolest in the dense forest, open low-rise and water LCZs in the cool and hot seasons, respectively. The compact high-rise LCZ was the warmest in both the hot (36 °C) and the cool (23 °C) seasons. The sea sands were among coolest regions in both seasons due to their high water content, attributed to their high water table and close proximity to the ocean. There was no thermal stress during the cool season, while most areas recorded moderate to strong heat stress in the hot season. Some areas in the densely built-up LCZs recorded very strong heat stress in the hot season. The findings suggest that policies and strategies should enhance heat mitigation capacities in strong-heat-stress areas during the hot season. Municipal authorities and citizens must work together to build strategies to minimize temperature extremes and associated socioeconomic pressures. Urban development policies, plans and strategies should consider implications on the thermal environment as well as the value of conservation of LCZs with high-heat mitigation value such as dense forests and expansion of built-up LCZs with low-heat absorption levels such as open low-rise. The study was based mainly on remotely sensed temperatures with some ground data used to validate results, which may limit the assessment. Overall, the study provides insights towards achievement of global sustainable and climate-smart development targets.
Mangrove Forest Cover Change in the Conterminous United States from 1980-2020
Giri C, Long J and Poudel P
Mangrove forests in developed and developing countries are experiencing substantial transformations driven by natural and anthropogenic factors. This study focuses on the conterminous United States, including Florida, Texas, and Louisiana, where coastal development, urbanization, hydrological pattern alterations, global warming, sea level rise, and natural disasters such as hurricanes contribute to mangrove forest changes. Using time-series Landsat data and image-processing techniques in a cloud computing platform, we analyzed the dynamics of mangrove forests every five years from 1980 to 2020. Each thematic product was independently derived using a region of interest (ROI) suitable for local conditions. The analysis was performed using consistent data sources and a unified classification methodology. Our results revealed that the total mangrove area in the conterminous United States (CONUS) in 2020 was 266,179 ha. with 98.0% of the mangrove area in Florida, 0.6% in Louisiana, and 1.4% in Texas. Approximately 85% of the CONUS mangrove area was found between 24.5° and 26.0° latitude. Overall, mangrove forests in the CONUS increased by 13.5% from 1980 to 2020. However, the quinquennial variation in aerial coverage fluctuated substantially. The validation of 2020 using a statistical sample of reference data confirmed the high accuracy of 95%. Our results can aid policymakers and conservationists in developing targeted strategies for preserving the ecological and socio-economic value of mangrove forests in the conterminous United States. Additionally, all the datasets generated from this study have been released to the public.
Impact of Atmospheric Correction on Classification and Quantification of Seagrass Density from WorldView-2 Imagery
Hill VJ, Zimmerman RC, Bissett P, Kohler D, Schaeffer B, Coffer M, Li J and Islam KA
Mapping the seagrass distribution and density in the underwater landscape can improve global Blue Carbon estimates. However, atmospheric absorption and scattering introduce errors in space-based sensors' retrieval of sea surface reflectance, affecting seagrass presence, density, and above-ground carbon () estimates. This study assessed atmospheric correction's impact on mapping seagrass using WorldView-2 satellite imagery from Saint Joseph Bay, Saint George Sound, and Keaton Beach in Florida, USA. Coincident in situ measurements of water-leaving radiance (), optical properties, and seagrass leaf area index (LAI) were collected. Seagrass classification and the retrieval of LAI were compared after empirical line height (ELH) and dark-object subtraction (DOS) methods were used for atmospheric correction. DOS left residual brightness in the blue and green bands but had minimal impact on the seagrass classification accuracy. However, the brighter reflectance values reduced LAI retrievals by up to 50% compared to ELH-corrected images and ground-based observations. This study offers a potential correction for LAI underestimation due to incomplete atmospheric correction, enhancing the retrieval of seagrass density and above-ground Blue Carbon from WorldView-2 imagery without in situ observations for accurate atmospheric interference correction.
Frontiers in Global Mangrove Forest Monitoring
Giri C
Accounting for Non-Detects: Application to Satellite Ammonia Observations
White E, Shephard MW, Cady-Pereira KE, Kharol SK, Ford S, Dammers E, Chow E, Thiessen N, Tobin D, Quinn G, O'Brien J and Bash J
Presented is a methodology to explicitly identify and account for cloud-free satellite measurements below a sensor's measurement detection level. These low signals can often be found in satellite observations of minor atmospheric species with weak spectral signals (e.g., ammonia (NH)). Not accounting for these non-detects can high-bias averaged measurements in locations that exhibit conditions below the detection limit of the sensor. The approach taken here is to utilize the information content from the satellite signal to explicitly identify non-detects and then account for them with a consistent approach. The methodology is applied to the CrIS Fast Physical Retrieval (CFPR) ammonia product and results in a more realistic averaged dataset under conditions where there are a significant number of non-detects. These results show that in larger emission source regions (i.e., surface values > 7.5 ppbv) the non-detects occur less than 5% of the time and have a relatively small impact (decreases by less than 5%) on the gridded averaged values (e.g., annual ammonia source regions). However, in regions that have low ammonia concentration amounts (i.e., surface values < 1 ppbv) the fraction of non-detects can be greater than 70%, and accounting for these values can decrease annual gridded averaged values by over 50% and make the distributions closer to what is expected based on surface station observations.
An Analysis of Prescribed Fire Activities and Emissions in the Southeastern United States from 2013 to 2020
Li Z, Maji KJ, Hu Y, Vaidyanathan A, O'Neill SM, Odman MT and Russell AG
Prescribed burning is a major source of a fine particular matter, especially in the southeastern United States, and quantifying emissions from burning operations accurately is an integral part of ascertaining air quality impacts. For instance, a critical factor in calculating fire emissions is identifying fire activity information (e.g., location, date/time, fire type, and area burned) and prior estimations of prescribed fire activity used for calculating emissions have either used burn permit records or satellite-based remote sensing products. While burn permit records kept by state agencies are a reliable source, they are not always available or readily accessible. Satellite-based remote sensing products are currently used to fill the data gaps, especially in regional studies; however, they cannot differentiate prescribed burns from the other types of fires. In this study, we developed novel algorithms to distinguish prescribed burns from wildfires and agricultural burns in a satellite-derived product, Fire INventory from NCAR (FINN). We matched and compared the burned areas from permit records and FINN at various spatial scales: individual fire level, 4 km grid level, and state level. The methods developed in this study are readily usable for differentiating burn type, matching and comparing the burned area between two datasets at various resolutions, and estimating prescribed burn emissions. The results showed that burned areas from permits and FINN have a weak correlation at the individual fire level, while the correlation is much higher for the 4 km grid and state levels. Since matching at the 4 km grid level showed a relatively higher correlation and chemical transport models typically use grid-based emissions, we used the linear regression relationship between FINN and permit burned areas at the grid level to adjust FINN burned areas. This adjustment resulted in a reduction in FINN-burned areas by 34%. The adjusted burned area was then used as input to the BlueSky Smoke Modeling Framework to provide long-term, three-dimensional prescribed burning emissions for the southeastern United States. In this study, we also compared emissions from different methods (FINN or BlueSky) and different data sources (adjusted FINN or permits) to evaluate uncertainties of our emission estimation. The comparison results showed the impacts of the burned area, method, and data source on prescribed burning emission estimations.
Mapping Malaria Vector Habitats in West Africa: Drone Imagery and Deep Learning Analysis for Targeted Vector Surveillance
Trujillano F, Garay GJ, Alatrista-Salas H, Byrne I, Nunez-Del-Prado M, Chan K, Manrique E, Johnson E, Apollinaire N, Kouame Kouakou P, Oumbouke WA, Tiono AB, Guelbeogo MW, Lines J, Carrasco-Escobar G and Fornace K
Disease control programs are needed to identify the breeding sites of mosquitoes, which transmit malaria and other diseases, in order to target interventions and identify environmental risk factors. The increasing availability of very-high-resolution drone data provides new opportunities to find and characterize these vector breeding sites. Within this study, drone images from two malaria-endemic regions in Burkina Faso and Côte d'Ivoire were assembled and labeled using open-source tools. We developed and applied a workflow using region-of-interest-based and deep learning methods to identify land cover types associated with vector breeding sites from very-high-resolution natural color imagery. Analysis methods were assessed using cross-validation and achieved maximum Dice coefficients of 0.68 and 0.75 for vegetated and non-vegetated water bodies, respectively. This classifier consistently identified the presence of other land cover types associated with the breeding sites, obtaining Dice coefficients of 0.88 for tillage and crops, 0.87 for buildings and 0.71 for roads. This study establishes a framework for developing deep learning approaches to identify vector breeding sites and highlights the need to evaluate how results will be used by control programs.
Changes in Onset of Vegetation Growth on Svalbard, 2000-2020
Karlsen SR, Elvebakk A, Tømmervik H, Belda S and Stendardi L
The global temperature is increasing, and this is affecting the vegetation phenology in many parts of the world. The most prominent changes occur at northern latitudes such as our study area, which is Svalbard, located between 76°30'N and 80°50'N. A cloud-free time series of MODIS-NDVI data was processed. The dataset was interpolated to daily data during the 2000-2020 period with a 231.65 m pixel resolution. The onset of vegetation growth was mapped with a NDVI threshold method which corresponds well with a recent Sentinel-2 NDVI-based mapping of the onset of vegetation growth, which was in turn validated by a network of in-situ phenological data from time lapse cameras. The results show that the years 2000 and 2008 were extreme in terms of the late onset of vegetation growth. The year 2020 had the earliest onset of vegetation growth on Svalbard during the 21-year study. Each year since 2013 had an earlier or equally early timing in terms of the onset of the growth season compared with the 2000-2020 average. A linear trend of 0.57 days per year resulted in an earlier onset of growth of 12 days on average for the entire archipelago of Svalbard in 2020 compared to 2000.
Quantifying Irrigated Winter Wheat LAI in Argentina Using Multiple Sentinel-1 Incidence Angles
Caballero G, Pezzola A, Winschel C, Casella A, Angonova PS, Orden L, Berger K, Verrelst J and Delegido J
Synthetic aperture radar (SAR) data provides an appealing opportunity for all-weather day or night Earth surface monitoring. The European constellation Sentinel-1 (S1) consisting of S1-A and S1-B satellites offers a suitable revisit time and spatial resolution for the observation of croplands from space. The C-band radar backscatter is sensitive to vegetation structure changes and phenology as well as soil moisture and roughness. It also varies depending on the local incidence angle (LIA) of the SAR acquisition's geometry. The LIA backscatter dependency could therefore be exploited to improve the retrieval of the crop biophysical variables. The availability of S1 radar time-series data at distinct observation angles holds the feasibility to retrieve leaf area index (LAI) evolution considering spatiotemporal coverage of intensively cultivated areas. Accordingly, this research presents a workflow merging multi-date S1 smoothed data acquired at distinct LIA with a Gaussian processes regression (GPR) and a cross-validation (CV) strategy to estimate cropland LAI of irrigated winter wheat. The GPR-S1-LAI model was tested against in situ data of the 2020 winter wheat campaign in the irrigated valley of Colorador river, South of Buenos Aires Province, Argentina. We achieved adequate validation results for LAI with and RMSE = 0.88 m m. The trained model was further applied to a series of S1 stacked images, generating temporal LAI maps that well reflect the crop growth cycle. The robustness of the retrieval workflow is supported by the associated uncertainties along with the obtained maps. We found that processing S1 smoothed imagery with distinct acquisition geometries permits accurate radar-based LAI modeling throughout large irrigated areas and in consequence can support agricultural management practices in cloudprone agri-environments.
Introducing ARTMO's Machine-Learning Classification Algorithms Toolbox: Application to Plant-Type Detection in a Semi-Steppe Iranian Landscape
Aghababaei M, Ebrahimi A, Naghipour AA, Asadi E, Pérez-Suay A, Morata M, Garcia JL, Caicedo JPR and Verrelst J
Accurate plant-type (PT) detection forms an important basis for sustainable land management maintaining biodiversity and ecosystem services. In this sense, Sentinel-2 satellite images of the Copernicus program offer spatial, spectral, temporal, and radiometric characteristics with great potential for mapping and monitoring PTs. In addition, the selection of a best-performing algorithm needs to be considered for obtaining PT classification as accurate as possible. To date, no freely downloadable toolbox exists that brings the diversity of the latest supervised machine-learning classification algorithms (MLCAs) together into a single intuitive user-friendly graphical user interface (GUI). To fill this gap and to facilitate and automate the usage of MLCAs, here we present a novel GUI software package that allows systematically training, validating, and applying pixel-based MLCA models to remote sensing imagery. The so-called MLCA toolbox has been integrated within ARTMO's software framework developed in Matlab which implements most of the state-of-the-art methods in the machine learning community. To demonstrate its utility, we chose a heterogeneous case study scene, a landscape in Southwest Iran to map PTs. In this area, four main PTs were identified, consisting of shrub land, grass land, semi-shrub land, and shrub land-grass land vegetation. Having developed 21 MLCAs using the same training and validation, datasets led to varying accuracy results. Gaussian process classifier (GPC) was validated as the top-performing classifier, with an overall accuracy (OA) of 90%. GPC follows a Laplace approximation to the Gaussian likelihood under the supervised classification framework, emerging as a very competitive alternative to common MLCAs. Random forests resulted in the second-best performance with an OA of 86%. Two other types of ensemble-learning algorithms, i.e., tree-ensemble learning (bagging) and decision tree (with error-correcting output codes), yielded an OA of 83% and 82%, respectively. Following, thirteen classifiers reported OA between 70% and 80%, and the remaining four classifiers reported an OA below 70%. We conclude that GPC substantially outperformed all classifiers, and thus, provides enormous potential for the classification of a diversity of land-cover types. In addition, its probabilistic formulation provides valuable band ranking information, as well as associated predictive variance at a pixel level. Nevertheless, as these are supervised (data-driven) classifiers, performances depend on the entered training data, meaning that an assessment of all MLCAs is crucial for any application. Our analysis demonstrated the efficacy of ARTMO's MLCA toolbox for an automated evaluation of the classifiers and subsequent thematic mapping.
Seasonal Mapping of Irrigated Winter Wheat Traits in Argentina with a Hybrid Retrieval Workflow Using Sentinel-2 Imagery
Caballero G, Pezzola A, Winschel C, Casella A, Angonova PS, Rivera-Caicedo JP, Berger K, Verrelst J and Delegido J
Earth observation offers an unprecedented opportunity to monitor intensively cultivated areas providing key support to assess fertilizer needs and crop water uptake. Routinely, vegetation traits mapping can help farmers to monitor plant development along the crop's phenological cycle, which is particularly relevant for irrigated agricultural areas. The high spatial and temporal resolution of the Sentinel-2 (S2) multispectral instrument leverages the possibility to estimate leaf area index (LAI), canopy chlorophyll content (CCC), and vegetation water content (VWC) from space. Therefore, our study presents a hybrid retrieval workflow combining a physically-based strategy with a machine learning regression algorithm, i.e., Gaussian processes regression, and an active learning technique to estimate LAI, CCC and VWC of irrigated winter wheat. The established hybrid models of the three traits were validated against in-situ data of a wheat campaign in the Bonaerense valley, South of the Buenos Aires Province, Argentina, in the year 2020. We obtained good to highly accurate validation results with LAI: R = 0.92, RMSE = 0.43 m m, CCC: R = 0.80, RMSE = 0.27 g m and VWC: R = 0.75, RMSE = 416 g m. The retrieval models were also applied to a series of S2 images, producing time series along the seasonal cycle, which reflected the effects of fertilizer and irrigation on crop growth. The associated uncertainties along with the obtained maps underlined the robustness of the hybrid retrieval workflow. We conclude that processing S2 imagery with optimised hybrid models allows accurate space-based crop traits mapping over large irrigated areas and thus can support agricultural management decisions.
Evaluation of Hybrid Models to Estimate Chlorophyll and Nitrogen Content of Maize Crops in the Framework of the Future CHIME Mission
Candiani G, Tagliabue G, Panigada C, Verrelst J, Picchi V, Caicedo JPR and Boschetti M
In the next few years, the new Copernicus Hyperspectral Imaging Mission (CHIME) is foreseen to be launched by the European Space Agency (ESA). This missions will provide an unprecedented amount of hyperspectral data, enabling new research possibilities within several fields of natural resources, including the "agriculture and food security" domain. In order to efficiently exploit this upcoming hyperspectral data stream, new processing methods and techniques need to be studied and implemented. In this work, the hybrid approach (HYB) and its variant, featuring sampling dimensionality reduction through active learning heuristics (HAL), were applied to CHIME-like data to evaluate the retrieval of crop traits, such as chlorophyll and nitrogen content at both leaf (LCC and LNC) and canopy level (CCC and CNC). The results showed that HYB was able to provide reliable estimations at canopy level (R = 0.79, RMSE = 0.38 g m for CCC and R = 0.84, RMSE = 1.10 g m for CNC) but failed at leaf level. The HAL approach improved retrieval accuracy at canopy level (best metric: R = 0.88 and RMSE = 0.21 g m for CCC; R = 0.93 and RMSE = 0.71 g m for CNC), providing good results also at leaf level (best metrics: R = 0.72 and RMSE = 3.31 μg cm for LCC; R = 0.56 and RMSE = 0.02 mg cm for LNC). The promising results obtained through the hybrid approach support the feasibility of an operational retrieval of chlorophyll and nitrogen content, e.g., in the framework of the future CHIME mission. However, further efforts are required to investigate the approach across different years, sites and crop types in order to improve its transferability to other contexts.
Multi-Season Phenology Mapping of Nile Delta Croplands Using Time Series of Sentinel-2 and Landsat 8 Green LAI
Amin E, Belda S, Pipia L, Szantoi Z, El Baroudy A, Moreno J and Verrelst J
Space-based cropland phenology monitoring substantially assists agricultural managing practices and plays an important role in crop yield predictions. Multitemporal satellite observations allow analyzing vegetation seasonal dynamics over large areas by using vegetation indices or by deriving biophysical variables. The Nile Delta represents about half of all agricultural lands of Egypt. In this region, intensifying farming systems are predominant and multi-cropping rotations schemes are increasing, requiring a high temporal and spatial resolution monitoring for capturing successive crop growth cycles. This study presents a workflow for cropland phenology characterization and mapping based on time series of green Leaf Area Index (LAI) generated from NASA's Harmonized Landsat 8 (L8) and Sentinel-2 (S2) surface reflectance dataset from 2016 to 2019. LAI time series were processed for each satellite dataset, which were used separately and combined to identify seasonal dynamics for a selection of crop types (wheat, clover, maize and rice). For the combination of L8 with S2 LAI products, we proposed two time series smoothing and fitting methods: (1) the Savitzky-Golay (SG) filter and (2) the Gaussian Processes Regression (GPR) fitting function. Single-sensor and L8-S2 combined LAI time series were used for the calculation of key crop Land Surface Phenology (LSP) metrics (start of season, end of season, length of season), whereby the detection of cropland growing seasons was based on two established threshold methods, i.e., a seasonal or a relative amplitude value. Overall, the developed phenology extraction scheme enabled identifying up to two successive crop cycles within a year, with a superior performance observed for the seasonal than for the relative threshold method, in terms of consistency and cropland season detection capability. Differences between the time series collections were analyzed by comparing the phenology metrics per crop type and year. Results suggest that L8-S2 combined LAI data streams with GPR led to a more precise detection of the start and end of growing seasons for most crop types, reaching an overall detection of 74% over the total planted crops versus 69% with S2 and 63% with L8 alone. Finally, the phenology mapping allowed us to evaluate the spatial and temporal evolution of the croplands over the agroecosystem in the Nile Delta.
Retrieval of Crop Variables from Proximal Multispectral UAV Image Data Using PROSAIL in Maize Canopy
Chakhvashvili E, Siegmann B, Muller O, Verrelst J, Bendig J, Kraska T and Rascher U
Mapping crop variables at different growth stages is crucial to inform farmers and plant breeders about the crop status. For mapping purposes, inversion of canopy radiative transfer models (RTMs) is a viable alternative to parametric and non-parametric regression models, which often lack transferability in time and space. Due to the physical nature of RTMs, inversion outputs can be delivered in sound physical units that reflect the underlying processes in the canopy. In this study, we explored the capabilities of the coupled leaf-canopy RTM PROSAIL applied to high-spatial-resolution (0.015 m) multispectral unmanned aerial vehicle (UAV) data to retrieve the leaf chlorophyll content (LCC), leaf area index (LAI) and canopy chlorophyll content (CCC) of sweet and silage maize throughout one growing season. Two different retrieval methods were tested: (i) applying the RTM inversion scheme to mean reflectance data derived from single breeding plots (mean reflectance approach) and (ii) applying the same inversion scheme to an orthomosaic to separately retrieve the target variables for each pixel of the breeding plots (pixel-based approach). For LCC retrieval, soil and shaded pixels were removed by applying simple vegetation index thresholding. Retrieval of LCC from UAV data yielded promising results compared to ground measurements (sweet maize RMSE = 4.92 μg/cm, silage maize RMSE = 3.74 μg/cm) when using the mean reflectance approach. LAI retrieval was more challenging due to the blending of sunlit and shaded pixels present in the UAV data, but worked well at the early developmental stages (sweet maize RMSE = 0.70m/m, silage RMSE = 0.61m/m across all dates). CCC retrieval significantly benefited from the pixel-based approach compared to the mean reflectance approach (RMSEs decreased from 45.6 to 33.1 μg/m). We argue that high-resolution UAV imagery is well suited for LCC retrieval, as shadows and background soil can be precisely removed, leaving only green plant pixels for the analysis. As for retrieving LAI, it proved to be challenging for two distinct varieties of maize that were characterized by contrasting canopy geometry.
Monitoring Cropland Phenology on Google Earth Engine Using Gaussian Process Regression
Salinero-Delgado M, Estévez J, Pipia L, Belda S, Berger K, Gómez VP and Verrelst J
Monitoring cropland phenology from optical satellite data remains a challenging task due to the influence of clouds and atmospheric artifacts. Therefore, measures need to be taken to overcome these challenges and gain better knowledge of crop dynamics. The arrival of cloud computing platforms such as Google Earth Engine (GEE) has enabled us to propose a Sentinel-2 (S2) phenology end-to-end processing chain. To achieve this, the following pipeline was implemented: (1) the building of hybrid Gaussian Process Regression (GPR) retrieval models of crop traits optimized with active learning, (2) implementation of these models on GEE (3) generation of spatiotemporally continuous maps and time series of these crop traits with the use of gap-filling through GPR fitting, and finally, (4) calculation of land surface phenology (LSP) metrics such as the start of season (SOS) or end of season (EOS). Overall, from good to high performance was achieved, in particular for the estimation of canopy-level traits such as leaf area index (LAI) and canopy chlorophyll content, with normalized root mean square errors (NRMSE) of 9% and 10%, respectively. By means of the GPR gap-filling time series of S2, entire tiles were reconstructed, and resulting maps were demonstrated over an agricultural area in Castile and Leon, Spain, where crop calendar data were available to assess the validity of LSP metrics derived from crop traits. In addition, phenology derived from the normalized difference vegetation index (NDVI) was used as reference. NDVI not only proved to be a robust indicator for the calculation of LSP metrics, but also served to demonstrate the good phenology quality of the quantitative trait products. Thanks to the GEE framework, the proposed workflow can be realized anywhere in the world and for any time window, thus representing a shift in the satellite data processing paradigm. We anticipate that the produced LSP metrics can provide meaningful insights into crop seasonal patterns in a changing environment that demands adaptive agricultural production.
Vegetation Types Mapping Using Multi-Temporal Landsat Images in the Google Earth Engine Platform
Aghababaei M, Ebrahimi A, Naghipour AA, Asadi E and Verrelst J
Vegetation Types (VTs) are important managerial units, and their identification serves as essential tools for the conservation of land covers. Despite a long history of Earth observation applications to assess and monitor land covers, the quantitative detection of sparse VTs remains problematic, especially in arid and semiarid areas. This research aimed to identify appropriate multi-temporal datasets to improve the accuracy of VTs classification in a heterogeneous landscape in Central Zagros, Iran. To do so, first the Normalized Difference Vegetation Index (NDVI) temporal profile of each VT was identified in the study area for the period of 2018, 2019, and 2020. This data revealed strong seasonal phenological patterns and key periods of VTs separation. It led us to select the optimal time series images to be used in the VTs classification. We then compared single-date and multi-temporal datasets of Landsat 8 images within the Google Earth Engine (GEE) platform as the input to the Random Forest classifier for VTs detection. The single-date classification gave a median Overall Kappa (OK) and Overall Accuracy (OA) of 51% and 64%, respectively. Instead, using multi-temporal images led to an overall kappa accuracy of 74% and an overall accuracy of 81%. Thus, the exploitation of multi-temporal datasets favored accurate VTs classification. In addition, the presented results underline that available open access cloud-computing platforms such as the GEE facilitates identifying optimal periods and multitemporal imagery for VTs classification.
Assessing Non-Photosynthetic Cropland Biomass from Spaceborne Hyperspectral Imagery
Berger K, Hank T, Halabuk A, Rivera-Caicedo JP, Wocher M, Mojses M, Gerhátová K, Tagliabue G, Dolz MM, Venteo ABP and Verrelst J
Non-photosynthetic vegetation (NPV) biomass has been identified as a priority variable for upcoming spaceborne imaging spectroscopy missions, calling for a quantitative estimation of lignocellulosic plant material as opposed to the sole indication of surface coverage. Therefore, we propose a hybrid model for the retrieval of non-photosynthetic cropland biomass. The workflow included coupling the leaf optical model PROSPECT-PRO with the canopy reflectance model 4SAIL, which allowed us to simulate NPV biomass from carbon-based constituents (CBC) and leaf area index (LAI). PROSAIL-PRO provided a training database for a Gaussian process regression (GPR) algorithm, simulating a wide range of non-photosynthetic vegetation states. Active learning was employed to reduce and optimize the training data set. In addition, we applied spectral dimensionality reduction to condense essential information of non-photosynthetic signals. The resulting NPV-GPR model was successfully validated against soybean field data with normalized root mean square error (nRMSE) of 13.4% and a coefficient of determination (R) of 0.85. To demonstrate mapping capability, the NPV-GPR model was tested on a PRISMA hyperspectral image acquired over agricultural areas in the North of Munich, Germany. Reliable estimates were mainly achieved over senescent vegetation areas as suggested by model uncertainties. The proposed workflow is the first step towards the quantification of non-photosynthetic cropland biomass as a next-generation product from near-term operational missions, such as CHIME.
Classification of Plant Ecological Units in Heterogeneous Semi-Steppe Rangelands: Performance Assessment of Four Classification Algorithms
Aghababaei M, Ebrahimi A, Naghipour AA, Asadi E and Verrelst J
Plant Ecological Unit's (PEUs) are the abstraction of vegetation communities that occur on a site which similarly respond to management actions and natural disturbances. Identification and monitoring of PEUs in a heterogeneous landscape is the most difficult task in medium resolution satellite images datasets. The main objective of this study is to compare pixel-based classification versus object-based classification for accurately classifying PEUs with four selected different algorithms across heterogeneous rangelands in Central Zagros, Iran. We used images of Landsat-8 OLI that were pan-sharpened to 15 m to classify four PEU classes based on a random dataset collected in the field (40%). In the first stage, we applied the following classification algorithms to distinguish PEUs: Minimum Distance (MD), Maximum Likelihood Classification (MLC), Neural Network-Multi Layer Perceptron (NN-MLP) and Classification Tree Analysis (CTA) for pixel based method and object based method. Then, by using the most accurate classification approach, in the second stage auxiliary data (Principal Component Analysis (PCA)) was incorporated to improve the accuracy of the PEUs classification process. At the end, test data (60%) were used for accuracy assessment of the resulting maps. Object-based maps clearly outperformed pixel-based maps, especially with CTA, NN-MLP and MD algorithms with overall accuracies of 86%, 72% and 59%, respectively. The MLC algorithm did not reveal any significant difference between the object-based and pixel-based analyses. Finally, complementing PCA auxiliary bands to the CTA algorithms offered the most successful PEUs classification strategy, with the highest overall accuracy (89%). The results clearly underpin the importance of object-based classification with the CTA classifier together with PCA auxiliary data to optimize identification of PEU classes.