Oribatida (Acari) in grassy arable fallows are more affected by soil properties than habitat age and plant species
Oribatid mites are one of the numerically dominant arthropod groups in soils. They play an important role in soil food webs via regulating the decomposition of organic matter and propagating microorganisms within the soil. To our knowledge, the influence of different plant functional groups on oribatid mites has not been studied in abandoned farmland with undisturbed succession before. The density and assemblage structure of oribatid mites in nine grassy arable fallows relative to three habitat age classes (2-3, 6-8, 12-15 years) and three selected plant species (legume: , forb: , grass: ) were investigated in soil associated with single plants. Mite density declined marginally not significant with habitat age because of high abundances of the ubiquitous species and in young and mid-aged fallows and their subsequent decline in old fallows. Oribatid mite density and species assemblage were not affected by plant species. Only had significantly higher densities in samples than in samples due to a higher amount of fine roots. Distance-based linear models revealed that 65% of the variation in mite assemblage was explained by soil properties, soil type, exposition and geographic position, while habitat age was of minor importance. Canonical correspondence analysis revealed that the mite assemblage was best explained by soil organic and microbial carbon, water content and pH.
Storage and shipping of tissue samples for DNA analyses: A case study on earthworms
Nowadays, molecular analyses play an important role in studies of soil dwelling animals, for example in taxonomy, phylogeography or food web analyses. The quality of the DNA, used for later molecular analyses, is an important factor and depends on collection and preservation of samples prior to DNA extraction. Ideally, DNA samples are frozen immediately upon collection, but if samples are collected in the field, suitable preservation methods might be limited due to unavailability of resources or remote field sites. Moreover, shipping samples over long distances can cause loss of DNA quality e.g. by thawing or leaking of preservation liquid. In this study we use earthworms, a key organism in soil research, to compare three different DNA preservation methods - freezing at -20 °C, storing in 75% ethanol, and freeze drying. Samples were shipped from the United States of America to Austria. The DNA of the samples was extracted using two different extraction methods, peqGOLD™ and Chelex 100. The DNA amplification success was determined by amplifying four DNA fragments of different length. The PCR amplification success is significantly influenced by preservation method and extraction method and differed significantly depending on the length of the DNA fragment. Freeze drying samples was the best preservation method when samples were extracted using the silica based extraction method peqGOLD™. For samples that were extracted with Chelex 100, storage in ethanol was the best preservation method. However, the overall amplification success was significantly lower for the extraction procedure based on Chelex 100. The detection of the small DNA fragments was higher and independent from the extraction method, while the amplification success was significantly reduced for the longer DNA fragments. We recommend freeze drying of DNA samples, especially when they have to be shipped for longer distances. No special packaging or declaration is needed for freeze dried samples, and the risk of thawing is excluded. Storage of freeze dried samples also reduces costs because samples can be kept at room temperature in a desiccator. It should be noted, that the extraction methods showed significant differences in DNA amplification success. Thus, the extraction method should be taken into account when choosing the preservation method.
Soil sand content can alter effects of different taxa of mycorrhizal fungi on plant biomass production of grassland species
In this greenhouse experiment we tested whether (i) ubiquitous arbuscular mycorrhizal fungi (AMF) taxa (, , , ) singly and in a mixture differently affect growth and biomass production of four co-occurring grassland species (grass: , non-leguminous forbs: , and leguminous forb ), and (ii) different soil sand contents alter AMF influence. We hypothesized that AMF effects on plants will increase with an increased AMF diversity and with increasing sand content. Percent AMF colonization of roots differed between plant species and AMF taxa and was higher with higher sand content. Plant growth responses to AMF were species-specific both regarding plants and AMF. Generally, biomass production of the non-leguminous forbs was the most responsive, the grass species the least and the legume intermediate both for AMF treatments and sand content. Across species, AMF influence on plant biomass increased with increasing soil sand content. Plant species growing in soil containing a mix of four AMF taxa showed similar growth responses than species in soil containing only one AMF taxon. These results suggest that both interference among AMF taxa and soil sand content can trigger the influence of AMF on plant production in grassland species.
Plant species effects on soil macrofauna density in grassy arable fallows of different age
The density of soil macrofauna groups in nine grassy arable fallows of different age were investigated in a factorial design with the factors 'plant species' (legume: , herb: , grass: ) and 'age class' (A1: 2-3/3-4, A2: 6-8/7-9, A3: 12-15/13-16 years in 2008/2009). Four plots were selected randomly at each fallow. In May 2008 and May 2009, within each plot five , and plants were extracted with their associated soil using steel cylinders. The material from each plant species was used for extraction of soil macrofauna and for determination of environmental parameters. The main results were (i) the density of the saprophagous macrofauna was significantly higher in than in and samples indicating that this group possibly benefited from the particularly high amount of fine roots in the samples; (ii) densities of Gastropoda and predatory beetles were highest in the 7-9 yr old fallows indicating that predators may have benefited from the increased availability of their prey in the medium stage of grassland succession; (iii) focusing on the results of the CCAs (2008, 2009), the water content had the strongest influence of the measured soil parameters on the structure of the soil macrofauna assemblages.
Soil enzymes activity: Effect of climate smart agriculture on rhizosphere and bulk soil under cereal based systems of north-west India
In agriculture production system, soil enzymes are important indicators of soil quality. Measurements of soil quality parameter changes are essential for assessing the impact of soil and crop management practices. Keeping this in view, an experiment was conducted to evaluate the enzyme activities namely dehydrogenase (DHA), β-glucosidase, acid and alkaline phosphatase ( & ), fluorescein diacetate hydrolases (FDH), cellulase, urease and aryl sulphatase in rhizosphere and bulk soil after 8 years of different management regimes. Soil organic carbon (SOC), moisture content and few enzyme indices such as enzymatic pH indicator (), alteration index three () and geometric mean () were also measured. The treatments were conventional rice-wheat system (termed as scenario (Sc1), CT system), partial conservation agriculture (CA)-based rice-wheat-mungbean system (Sc2, PCA-RW), partial climate smart agriculture (CSA)-based rice-wheat-mungbean system (Sc3), partial CSA-based maize-wheat-mungbean system (Sc4), full CSA-based rice-wheat-mungbean system (Sc5), and full CSA-based maize-wheat-mungbean system (Sc6). Soil samples were collected from rhizosphere and away from roots (bulk soil) at 0-15 cm soil depth before sowing (from rhizosphere of previous crops), at maximum tillering, flowering, and after harvesting of wheat crop. Results showed that DHA activity was higher before sowing (59.8%), at maximum tillering (48.4%), flowering (8.6%) and after harvesting (19.1%) in rice based CSA systems (mean of Sc3 and Sc5) over maize based CSA systems (mean of Sc4 and Sc6) in rhizospheric soil. On average, β-glucosidase activity was significantly higher in rhizospheric soils of rice based system over maize based CSA system. Before sowing of wheat, significantly higher (21.4%) acid phosphatase activity was observed in rhizosphere over bulk soils of maize based CSA system. Significantly higher alkaline phosphatase activity was observed before sowing of wheat in bulk soils of rice (25.3%) and maize (38.5%) based CSA systems over rhizospheric soils. Rice based CSA systems showed 27% higher FDH activity than maize based systems. Significant interaction effect was observed between the managements and enzymes. SOC played an important role in regulating the enzymes activity both in rhizosphere and bulk soil. Significant variation in , and was observed among the managements. Therefore, CSA managements are beneficial in improving enzyme activities not only in rhizosphere but also in bulk soil where residues are retained thereby may help in improving nutrient cycling.
